Publications for Jin Wang

72. J. Wang, L. Xu, E. K. Wang, “Potential Landscape and Flux Framework of Non-Equilibrium Networks: Robustness, Dissipation and Coherence of Biochemical Oscillations” Proc. Natl. Acad. Sci. 105: 12271-12276. (2008).

71. D. Lepzelter, J. Wang, “Exact probabilistic solution of spatial-dependent stochastics and associated spatial potential landscape for the bicoid protein”, Phys. Rev. E. 77, 041917(2008).

70. D. Li, G. Li, W. Guo, P. Li, E. Wang, J. Wang, "Glutathione-mediated release of functional plasmid DNA from positively charged quantum dots", Biomaterials 29, 2776–2782(2008).

69. B. Han, J. Wang, “Least dissipation cost as a design principle for robustness and function of cellular networks”, Phys. Rev. E 77, 031922 (2008).

68. Q. Lu, J. Wang, “Single Molecule Conformational Dynamics of Adenylate Kinase: Energy Landscape, Structural Correlations, and Transition State Ensembles”, J. Amer. Chem. Soc. 130, 4772(2008).

67. E. Ying, D. Li, S. Guo, S. Dong, J. Wang, "Synthesis and Bio-Imaging Application of Highly Luminescent Mercaptosuccinic Acid-Coated CdTe Nanocrystals", PLOS One, 3, e2222(2008).

66. S. Lapidus, B. Han, J. Wang, “Intrinsic noise, dissipation cost, and robustness of cellular networks: The underlying energy landscape of MAPK signal transduction”, Proc. Natl. Acad. Sci. 105, 6039(2008).

65. Z. J. Liu, X. Zheng, J. Wang, E. K. Wang, “Molecular Analysis of Thymopentin Binding to HLA-DR Molecules”, PLOS One, 2(12), e1348(2007).

64. J. Wang, X. Zheng, Y. Yang, D. Drueckhammer, W. Yang, G. Verkhivker, E. K. Wang, “Quantifying intrinsic specificity: A potential complement to affinity in drug screening’’, Phys. Rev. Lett. 99, 198101 (2007).

63. J. Chahine, R. J. Oliveira, V. B. P. Leite, and J. Wang, “Configuration-dependent diffusion can shift the kinetic transition state and barrier height of protein folding”, Proc. Natl. Acad. Sci. 104, 14646 (2007)

62. D. Lepzelter, K. Kim, J. Wang, “Dynamics and Intrinsic Statistical Fluctuations of a Gene Switch”, J. Phys. Chem. B, 111, 10239(2007).

61. J. Wang, L. Xu, E. K. Wang, “Optimal Specificity and Function for Flexible Biomolecular Recognition”, Biophys. J. Lett. 92, L109(2007).

60. B. Han, J. Wang, “Quantifying Robustness and Dissipation Cost of Yeast Cell Cycle Network: The Funneled Energy Landscape Perspectives’’, Journal Cover Article, Biophys. J., 92, 3755 (2007).

59. K. Kim, J. Wang, “Potential Energy Landscape and Robustness of A Gene Regulatory Network: Toggle Switch’’, PLOS Comp. Biol., 3, e60 (2007).

58. Q. Lu, P. H. Lu, J. Wang, “Exploring the mechanism of flexible biomolecular recognition with single molecule dynamics’’, Phys. Rev. Lett. 98, 128105(2007).

57. K. Kim, D. Lepzelter, J. Wang, “Single Molecule Dynamics and Statistical Fluctuations of Gene Regulatory Networks: A Repressilator’’, J. Chem. Phys. 126, 034702(2007).

56. J. Wang, K. Zhang, H.Y. Lu, E. K. Wang, "Quantifying the Kinetic Paths of Flexible Biomolecular Recognition", Biophys. J. 91, 866(2006).

55. Y. Wang, L. Gan, H. Chen, S. Dong, J. Wang, ``Structure and Identity of 4,4'-Thiobisbenzenethiol Self-Assembled Monolayers'', J. Phys. Chem. B. 110, 20418(2006).

54. J. Wang, B. Huang, X. F. Xia, Z. R. Sun, “Funneled Landscape Leads to Robustness of Cell Networks: Yeast Cell Cycle", PLOS Comp. Biol. 2. e147, 1385(2006).

53. J. Wang, Q. Lu, P. Lu, “Single-Molecule Dynamics Reveals Cooperative Binding-Folding in Protein Recognition”, PLOS Comp. Biol. 2, e78, 0842(2006)

52. J. Wang, “Diffusion and single molecule dynamics on biomolecular interface binding energy landscape”, Chem. Phys. Lett. 418, 540(2006).

51. J. Wang, B. Huang, X. F. Xia, Z. R. Sun, “Funneled Landscape Leads to Robustness of Cellular Networks: MAPK Signal Transduction'', Biophys. J. Lett. 91, L54(2006).

50. J. Wang, K. Zhang, H. Y. Lu, E. K. Wang, “Identifying the Kinetic Paths on Biomolecular Binding-Folding Energy Landscape”, Phys. Rev. Lett. 96, 168101(2006).

49. J. E. M. Hornos, D. Schultz, G. C. P. Innocentini, J. Wang, A. M. Walczak, J. N. Onuchic, and P. G. Wolynes, “Self-Regulating gene: An Exact Solution'', Phys. Rev. E. 72, 051907(2005).

48. V. B. P. Leite, L. C. P. Alonso, M. Newton, and J. Wang, “Single Molecule Electron Transfer Dynamics in Complex Environments .” Phys. Rev. Lett. 95, 118301(2005).

47. J. Wang, K. Zhang, H. Y. Lu, and E.K. Wang, “Quantifying Kinetic Paths of Protein Folding,” Biophys. J. 89, 1612–1620(2005).

46. J. Wang, C. Lee, G. Stell, “The cooperative nature of hydrophobic forces and protein folding kinetics,” Chemical Physics 316, 53–60(2005).

45. J. Wang, “The Complex Kinetics of Protein Folding in Wide Temperature Ranges,” Biophys. J. 87, 2164(2004).

44. J. Wang, W. M. Huang, H. Y. Lu, and E. K. Wang, “Downhill Kinetics of Biomolecular Interface Binding-Global Connected Scenario,” Biophys. J. 87, 2187 (2004).

43. V. B.P. Leite, J.N. Onuchic, G. Stell, and J. Wang, “Probing the Kinetics of Single Molecule Protein Folding,” Biophys. J. 87, 3633 (2004).

42. Y. Zhou, Q. Zhang, G. Stell, J. Wang, ``Temperature Dependence of the distribution of the First Passage Time, Results from Discontinuous Molecular Dynamics Simulations of an All Atom Model of the Second Beta Hairpin Fragment of Protein G'', J. Amer. Chem. Soc. 125, 6300(2003)

41. C. L. Lee, C. T. Lin, G. Stell, J. Wang, ``Diffusion Dynamics, Moments and Distributions of First Passage Time on Protein Folding Energy Landscapes, with Applications to Single Molecules '', Phys. Rev. E. 67, 41905(2003)

40. J. Wang, G. M. Verkhivker, `` Energy Landscape Theory, Funnels, Specificity and Optimal Criterion of Biomolecular Binding'', Phys. Rev. Lett. 90, 188101(2003)

39. C. L. Lee, G. Stell, J. Wang, ``First Passage Time Distribution and Non-Makovian Dynamics of Protein Folding'', J. Chem. Phys. 118, 959(2003)

38. J. Wang , ``Statistics, Pathways and Single Molecule Folding'', J. Chem. Phys. 118, 952(2003)

37. J. Wang, P. G. Wolynes, " Reaction Diffusion Description of Intermittency of Single Molecule Reaction Dynamics in Fluctuating Environments ", J. Chem. Phys. 110, 4812, (1999).

36. B. A. Shoemaker, J. Wang, P. G. Wolynes, " Exploring Structures in Protein Folding Funnels with Free Energy Functionals: The Transition State Ensemble", B. A. Shoemaker, J. Wang, P. G. Wolynes, J. Mol. Biology 287, 675 (1999).

35. J. N. Onuchic, J. Wang, P. G. Wolynes, "Analyzing Single Molecule Trajectories on Complex Energy Landscapes Using Replica Correlation Function", Chem. Phys. 247,175 (1999).

34. J. Wang, " Single Molecule Reaction Dynamics", Proceedings of International Symposium on Applied Chemistry (Changchun, 1998).

33. S. S. Plotkin, J. Wang, P. G. Wolynes, "Statistical Thermodynamics of Correlated Energy Landscape", Physica D 107, 322(1997).

32. S. Okazaki, J. Wang, S. A. Schofield, P. G. Wolynes, "Quantum Twinkling: Fluctuation and Coherence through the High Order Moments of the Wave Function", Chem. Phys. 222, 175(1997).

31. S. S. Plotkin, J. Wang, P. G. Wolynes, "Statistical Mechanics of a Correlated Energy Landscape Model for Protein Folding Funnels", J. Chem. Phys. 106, 2932 (1997).

30. J. Wang, S. S. Plotkin, P. G. Wolynes, " Configurational Diffusion in a Locally Connected Correlated Energy Landscape Model for Random heteropolymers", J. de. Physique. 7, 395(1997).

29. B. A. Shoemaker, J. Wang, P. G. Wolynes, "Structure Correlations in Protein Folding Funnels", Proc. Natl. Acad. Sci. 94, 777(1997).

28. J. Wang, "Dynamics of Protein Folding Funnels", Proceedings of International Symposium on Statistical Physics and Biophysics (Taipei, 1997).

27. J. Wang, "Transition State Ensembles of Protein Folding Funnel: A Detailed Study of CI2", Proceedings of International Symposium on Chemistry (Hong Kong, 1997).

26. J. Wang, J. G. Saven, P. G. Wolynes, "Kinetics in a Globally Connected, Correlated Random Energy Model", J. Chem. Phys. 105, 11276 (1996).

25. J. Wang, P. G. Wolynes, " Instantons and the Fluctuating Path Description of Reactions in Complex Biological Environments", J. Physical Chemistry, 100, 1129(1996).

24. J. Wang, J. N. Onuchic, P. G. Wolynes, " Statistics and Kinetic Pathways of Protein Folding on Complex Energy Landscapes", Phys. Rev Lett. 76, 4861(1996).

23. S. Plotkin, J. Wang, P. G. Wolynes, " A Correlated Energy Landscape Model for Finite, Random Heteropolymers", Phys. Rev. E. 53, 6271(1996).

22. A. R. Panchenko , J. Wang, G. U. Nienhaus, P. G. Wolynes, " Dynamics of Binding of Myglobin and CO Ligand", Biophys. J. 68, A82 (1995).

21. J. Wang, P. G. Wolynes, "Reaction Dynamics in Fluctuating Proteins'', Proceedings of 19th IUPAP on Statistical Physics (1995).

20. A. R. Panchenko, J. Wang, G. U. Nienhaus, P. G. Wolynes, "Analysis of Ligand Binding to Heme Proteins Using a Fluctuating Path Description'', J. Phys. Chem. 99, 9278(1995).

19. J. Wang, P. G. Wolynes, "Intermittency of Single Molecule Reaction Dynamics in Fluctuating Environments", Phys. Rev. Lett. 74, 4317 (1995).

18. H. Bohr, J. Wang, P. G. Wolynes, "Growth of Domains in Distance Geometry through Protein Folding", Proceedings of Protein Structure by Distance Analysis, (IOS Press, Amesterdam, 1994).

17. J. Wang, P. G. Wolynes, "Survival Path for Reaction Dynamics in Fluctuating Environment", Chem. Phys. 180, 141(1994).

16. J. G. Saven, J. Wang, P. G. Wolynes, "Kinetics of Protein Folding: the Dynamics of Globally Connected Rough Energy Landscapes with Biases", J. Chem. Phys. 101, 11037(1994).

15. J. Wang, P. G. Wolynes, "Passage Through Fluctuating Barrier-General Gaussian Case", Chem Phys. Lett. 212, 427 (1993).

14. J. Wang, A. Hubler , " Control of Chaos for Solitons", Proceedings of Santa Fe Complex System Summer School (1991).

13. J. Wang , "Quantum Cosmology of Supersymmetric Strings", Phys. Rev. D. 45, 412 (1992).

12. J. Wang, "Ten Dimensional Supergravity Wormhole", Astrophysics and Space Science 189, 5 (1992).

11. J. Wang , "Constraints of Axion Mass from White Dwarf Cooling", Modern Phys. Lett. A. 7, 1497(1992).

10. J. Wang , "Constraints of Axion Mass from Carbon Oxygen Burning Stage of Stellar Evolution", Phys. Lett. B 291, 97(1992).

9. J. Wang, "Constraints of Neutrino Magnetic Moment from White Dwarf Cooling", Astrophysics and Space Science 189, 1 (1992).

8. J. Wang, S. Mohanty , "Quantum Cosmology of String Theory", Phys. Lett. B. 269, 279 (1991).

7. J. Wang , "Cosmic Strings in the Sun?", Modern Physics Letters A. 6, 2101(1991).

6. J. Wang , "Astrophysical Constraints of Gravitational Constant", Astrophysics and Space Science 184, 31(1991).

5. J. Wang, "Bounds on KSVZ Axions from High Mass Star Evolution", Astrophysics and Space Science 184, 1(1991).

4. J. Wang , "Primordial Magnetic Field and Density Fluctuation from Early Universe Phase Transition" , AIP Proceedings 222 "After the First Three Minutes" (1991).

3. D. Chang, A. Kumar, J. Wang , "Search For Extended Conformal Algebra", Modern Physics Letters. A. 5, 1511(1990).

2. D. Chang, A. Kumar, J. Wang , "Heterotic Conformal Field Theory and Gepner's Construction", Phys. Rev. D. 42, No. 8, 2694 (1990).

1. J. Haglin, S. Kelly, J. Wang , "On the Analysis of Flavour Changing Neutral Current From SUSY", BNL Workshop Proceedings on Rare K decays and CP violation (1988).